AuxiScan
A tool for Automatic Functional Annotation of Auxin-related genes in Plants
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STEP 1 - Upload your protein sequences
Upload the multi-FASTA file containing the proteome. CARREFULL : This file must be unzipped and less than 10MB
STEP 2 - Enter your analysis name and email
Analysis name:
Email:
STEP 3 - Select family genes you want to look for
Biosynthesis
AMI1
NIT
TAA
TSB
YUC
Perception
ABP1
TIR
Regulation
ARF
AUX/IAA
TOPLESS
Response & Homeostasis
GH3
SAUR
Transport
AUX/LAX
PIN
Select/Unselect all
STEP 4 (optional) - Look for miRNA targets
Upload the multi-FASTA file containing cDNAs CARREFULL : This file must be unzipped and less than 10MB
Miranda score
STEP 5 (optional) - Build phylogenetic tree(s)
Do you want phylogenetic analysis? CARREFULL : Phylogeny analysis could take several hours. We recommand you to begin with simple analyses.
Yes using fast likelihood-based method
Yes using bootstrap
No
Bootstrap score
Submit
